Installation and usage

The package can be installed from PyPI or directly from GitHub. It requires a Python version of 3.10 or newer. It is based on NetworkX and pandas and requires Cytoscape for visualization. The latter can be downloaded from here.

python -m pip install perturbationx # PyPI
python -m pip install git+https://github.com/mikethenut/perturbationx # GitHub

An example Jupyter notebook example.ipynb is available for step-by-step instructions on how to use the package. For advanced usage, refer to the documentation and the Master’s thesis.